spacr

spaCR public package and version metadata.

Submodules

The supported workflow modules stay in the main navigation. The complete directory below remains available for contributors without turning every implementation module into an implied public contract.

• spacr.api
• spacr.core
• spacr.measure
• spacr.deep_spacr
• spacr.sequencing
• spacr.ml
• spacr.artifacts
• spacr.settings

Complete contributor module directory

• spacr.__main__

• spacr._gc

• spacr._lineage_measurements

• spacr._lineage_trees

• spacr._mask_workers

• spacr._merged_names

• spacr._starplast

• spacr._version

• spacr.accelerator

• spacr.active_learning

• spacr.agreement

• spacr.align

• spacr.anndata_export

• spacr.annotation

• spacr.annotation_dataset

• spacr.annotation_power

• spacr.annotation_umap_qc

• spacr.annotation_validation

• spacr.api

• spacr.artifacts

• spacr.attribution

• spacr.attribution_columns

• spacr.barcode_search

• spacr.baseline

• spacr.batch

• spacr.batch_correction

• spacr.benchmark

• spacr.bystanders

• spacr.cancellation

• spacr.cell_montage

• spacr.chaining

• spacr.channel_sorting

• spacr.checkpoint

• spacr.classification_pixels

• spacr.classifier_evaluation

• spacr.classifier_quality

• spacr.classify

• spacr.classify_classes

• spacr.cli

• spacr.cli_database

• spacr.cli_download

• spacr.cli_leakage

• spacr.cli_make_masks

• spacr.cli_plugins

• spacr.cli_remote

• spacr.cli_repro

• spacr.cli_workspace

• spacr.column_groups

• spacr.columns

• spacr.condition_annotations

• spacr.confusion

• spacr.control_names

• spacr.convert

• spacr.core

• spacr.counting

• spacr.crashreport

• spacr.crop_loader

• spacr.crop_source

• spacr.crops

• spacr.curation

• spacr.curation_queue

• spacr.custom_features

• spacr.data_manager

• spacr.database_concurrency

• spacr.database_schema

• spacr.deep_spacr

• spacr.dependent_join

• spacr.derived_tables

• spacr.diameter

• spacr.doctor

• spacr.drop_classification

• spacr.embeddings

• spacr.errors

• spacr.example_archives

• spacr.example_data

• spacr.example_data_manifest

• spacr.external_masks

• spacr.feature_dict

• spacr.figure_font

• spacr.figure_sink

• spacr.figure_style

• spacr.figures

• spacr.filters

• spacr.fit_resources

• spacr.flowview

• spacr.folder_consolidation

• spacr.foreign

• spacr.fraction_calibration

• spacr.frame_handoff

• spacr.gate_library

• spacr.gene_facts

• spacr.gene_measurement_compare

• spacr.gene_measurement_sweep

• spacr.gene_tile

• spacr.gpu_reduce

• spacr.graph_types

• spacr.group_lasso

• spacr.guide_attribution

• spacr.guide_concordance

• spacr.guide_permutation

• spacr.hit_attribution

• spacr.hit_investigation

• spacr.hits

• spacr.host_pathogen

• spacr.host_pathogen_example

• spacr.host_pathogen_preview

• spacr.hyperparam

• spacr.illumination

• spacr.image_colors

• spacr.image_import

• spacr.image_quality

• spacr.image_stitch

• spacr.import_examples

• spacr.import_plan

• spacr.infection

• spacr.inference_augmentation

• spacr.install_cleanup

• spacr.install_profile

• spacr.intensity_rescale

• spacr.io

• spacr.layers

• spacr.lineage

• spacr.localisation

• spacr.logger

• spacr.logging_util

• spacr.macro

• spacr.mask_io

• spacr.measure

• spacr.measure_hooks

• spacr.measurement_scan

• spacr.measurement_schema

• spacr.merge_tables

• spacr.metadata_resolution

• spacr.methods_export

• spacr.mixed_gpu

• spacr.ml

• spacr.model_check

• spacr.model_compare

• spacr.model_zoo

• spacr.multi_database

• spacr.multiple_testing

• spacr.napari_bridge

• spacr.nonparametric_fits

• spacr.normalization

• spacr.notebook_export

• spacr.object

• spacr.object_classifier

• spacr.object_distances

• spacr.object_roles

• spacr.object_settings_table

• spacr.ome_zarr

• spacr.omero

• spacr.openmp_guard

• spacr.ops_accel

• spacr.ops_compose

• spacr.ops_cycles

• spacr.ops_engine

• spacr.ops_layout

• spacr.ops_merge

• spacr.ops_objects

• spacr.ops_phenotype

• spacr.ops_register

• spacr.ops_sample

• spacr.ops_sbs

• spacr.ops_settings

• spacr.ops_solve

• spacr.ops_stitch

• spacr.ops_store

• spacr.organelle_types

• spacr.original_filenames

• spacr.outlier_filter

• spacr.parameter_sweep

• spacr.permutation_qc

• spacr.picture_settings

• spacr.pipeline_graph

• spacr.pipeline_v2

• spacr.plaque

• spacr.plaque_growth

• spacr.plaque_papers

• spacr.plate_measurements

• spacr.plate_qc

• spacr.plot

• spacr.plugins

• spacr.png_list

• spacr.point_patterns

• spacr.point_spread

• spacr.portable_paths

• spacr.ports

• spacr.power_model

• spacr.power_simulate

• spacr.predictions

• spacr.profiler

• spacr.projects

• spacr.psf_measurement

• spacr.psf_pipeline

• spacr.qc_quarantine

• spacr.qt

• spacr.read_background

• spacr.refit

• spacr.regex_infer

• spacr.regression_annotation

• spacr.regression_backends

• spacr.regression_diagnostics

• spacr.regression_failure

• spacr.regression_families

• spacr.regression_layout

• spacr.regression_panels

• spacr.regression_qc

• spacr.regression_search

• spacr.regression_spec

• spacr.regression_summary

• spacr.remote_execution

• spacr.report

• spacr.resource_log

• spacr.response_distribution

• spacr.restart_state

• spacr.resume

• spacr.roi

• spacr.row_exclusions

• spacr.rra

• spacr.run_compare

• spacr.run_journal

• spacr.run_recommendations

• spacr.runctx

• spacr.schema

• spacr.scorecard

• spacr.screen_data

• spacr.seg_qc

• spacr.segmentation_uncertainty

• spacr.selection

• spacr.sequencing

• spacr.sequencing_qc

• spacr.setting_animations

• spacr.settings

• spacr.settings_advisor

• spacr.settings_spec

• spacr.sim

• spacr.sp_stats

• spacr.spacr_cellpose

• spacr.sra

• spacr.stream_dataset

• spacr.style_base

• spacr.submodules

• spacr.sudoku

• spacr.suggest

• spacr.surrogate

• spacr.sweep_child

• spacr.tabular

• spacr.thresholds

• spacr.tiff_io

• spacr.timeflows_baseline

• spacr.timeflows_model

• spacr.timeflows_qc

• spacr.timeflows_validation

• spacr.timelapse

• spacr.torch_artifacts

• spacr.toxo

• spacr.train_compare

• spacr.training_basis

• spacr.trial_metrics

• spacr.umap_annotations

• spacr.umap_search

• spacr.uniprot

• spacr.updater

• spacr.utils

• spacr.validate

• spacr.version

• spacr.volcano_style

• spacr.well_scope

• spacr.well_spec

• spacr.workspace

• spacr.zstack

Functions

download_models([repo_id, retries, delay])

Download spaCR's optional model files on first use.

Package Contents

spacr.download_models(repo_id='einarolafsson/models', retries=5, delay=5)

Download spaCR’s optional model files on first use.

The implementation is imported only when called, keeping import spacr and wildcard imports lightweight.